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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
129
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
131
Transcription
19
DNA accessibility
Date released
39
February, 2023
26
February, 2021
26
September, 2018
16
September, 2020
14
June, 2019
8
October, 2019
6
May, 2021
5
December, 2019
5
July, 2019
2
March, 2020
2
October, 2018
1
November, 2019
Available data
93
bam
93
bigWig
81
fastq
78
tsv
17
bed narrowPeak
17
bigBed narrowPeak
16
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
Organism
150
Homo sapiens
Biosample type
111
primary cell
35
cell line
2
in vitro differentiated cells
2
tissue
Organ
483
connective tissue
411
pancreas
400
adipose tissue
195
liver
150
epithelium
141
kidney
102
heart
72
vasculature
70
blood vessel
62
bone element
60
artery
49
brain
43
limb
39
musculature of body
23
eye
18
ureter
14
embryo
7
nerve
4
skeleton
2
vein
1
pericardium
1
spinal cord
1
spleen
Project
95
AMP
53
HPAP
2
T1D
Genome assembly (visualization)
93
GRCh38
87
hg19
Lab
97
AMP-T2D consortium
53
Klaus Kaestner, Upenn
Audit category:
35
inconsistent ontology term
BIOSAMPLE
ASSAY
150 results
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total RNA-seq
DNase-seq
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
hepatocyte
5
1
kidney tubule cell
1
3
pancreatic acinar cell
4
+ See 13 more…
cell line
EndoC_BH1
33
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
tissue
pigmented layer of retina
2
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