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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
409
total RNA-seq
257
ChIP-seq
153
ATAC-seq
75
single cell RNA-seq
52
WGBS
41
DNase-seq
15
Hi-C
12
snATAC-seq
10
MeRIP-seq
7
RRBS
4
small RNA-seq
2
Capture-C
2
FAIRE-seq
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
41
DNA accessibility
Date released
37
June, 2019
2
November, 2018
1
August, 2017
1
October, 2019
Available data
41
bam
41
bed narrowPeak
41
bigBed narrowPeak
41
bigWig
40
bed bed3+
40
bed broadPeak
40
bigBed broadPeak
3
fastq
Organism
41
Homo sapiens
Biosample type
39
tissue
1
cell line
1
primary cell
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
41
AMP
Genome assembly (visualization)
41
GRCh38
39
hg19
Lab
41
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
41 results
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DNase-seq
tissue
muscle of arm
17
muscle of leg
13
body of pancreas
4
pancreas
2
forelimb muscle
1
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cell line
Panc1
1
primary cell
skeletal muscle cell
1
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