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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1868
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
4
DNA accessibility
Date released
5
January, 2018
2
July, 2019
1
August, 2017
1
November, 2018
Available data
10
bigWig
7
fastq
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
tar
Organism
9
Homo sapiens
Biosample type
4
in vitro differentiated cells
4
tissue
1
stem cell
Organ
2
pancreas
1
brain
1
embryo
1
kidney
Project
9
AMP
Genome assembly (visualization)
5
hg18
4
hg19
Lab
9
AMP-T2D consortium
assay_title!
MPRA
files.file_type!
tar
BIOSAMPLE
ASSAY
9 results
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GRO-seq
FAIRE-seq
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
tissue
frontal cortex
1
islet of Langerhans
1
kidney
1
pancreas
1
stem cell
hESC
1
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