Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
217
DNA accessibility
Date released
187
June, 2019
11
October, 2019
10
November, 2018
6
August, 2017
2
July, 2019
1
November, 2020
Available data
214
bam
214
bed narrowPeak
214
bigBed narrowPeak
214
bigWig
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
14
fastq
1
tar
Organism
217
Homo sapiens
Biosample type
182
tissue
32
primary cell
2
cell line
1
in vitro differentiated cells
Organ
82
kidney
36
limb
33
brain
33
musculature of body
30
heart
20
epithelium
18
ureter
12
vasculature
10
blood vessel
10
pancreas
9
connective tissue
6
liver
4
artery
4
eye
3
vein
2
adipose tissue
2
nerve
1
spleen
Project
217
AMP
Genome assembly (visualization)
207
GRCh38
191
hg19
Lab
217
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
217 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
FAIRE-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
1
muscle of leg
13
+ See 40 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
1
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 18 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download