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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1535
ChIP-seq
1444
total RNA-seq
526
ATAC-seq
363
single cell RNA-seq
207
DNase-seq
87
RNA microarray
84
snATAC-seq
66
WGBS
57
pCHi-C
34
Hi-C
18
small RNA-seq
15
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
211
DNA accessibility
Date released
187
June, 2019
11
October, 2019
10
November, 2018
August, 2017
2
July, 2019
1
November, 2020
Available data
209
bam
209
bed narrowPeak
209
bigBed narrowPeak
209
bigWig
204
bed bed3+
204
bed broadPeak
204
bigBed broadPeak
10
fastq
1
tar
Organism
211
Homo sapiens
Biosample type
179
tissue
30
primary cell
2
cell line
Organ
82
kidney
36
limb
33
brain
33
musculature of body
30
heart
20
epithelium
18
ureter
12
vasculature
10
blood vessel
8
connective tissue
8
pancreas
5
liver
4
artery
4
eye
3
vein
2
adipose tissue
2
nerve
1
spleen
Project
211
AMP
Genome assembly (visualization)
205
GRCh38
186
hg19
Lab
211
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
211 results
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Clear Filters
DNase-seq
FAIRE-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
1
muscle of leg
13
+ See 39 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
1
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 17 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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