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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1772
ChIP-seq
1403
total RNA-seq
489
ATAC-seq
354
single cell RNA-seq
208
DNase-seq
84
snATAC-seq
75
WGBS
48
pCHi-C
29
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
29
3D chromatin structure
5
DNA accessibility
Date released
10
July, 2019
8
March, 2020
4
October, 2019
3
August, 2021
3
October, 2022
1
August, 2017
1
December, 2018
1
March, 2019
1
March, 2023
1
November, 2018
1
November, 2019
Available data
18
hic
15
bedpe bed3+
10
bigWig
5
bam
5
bed bed3+
5
bed narrowPeak
5
bigBed narrowPeak
5
hdf5
3
cool
3
fastq
1
bedpe
1
tar
Organism
34
Homo sapiens
Biosample type
20
tissue
11
primary cell
3
cell line
Organ
10
pancreas
8
epithelium
6
blood vessel
6
musculature of body
6
vasculature
4
brain
4
limb
4
liver
3
heart
3
vein
2
kidney
1
connective tissue
Project
30
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
27
hg19
2
GRCh38
Lab
26
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
34 results
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Clear Filters
Hi-C
FAIRE-seq
tissue
gastrocnemius medialis
4
islet of Langerhans
3
1
kidney
1
1
pancreas
1
1
psoas muscle
2
+ See 6 more…
primary cell
endothelial cell of umbilical vein
2
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 4 more…
cell line
HepG2
2
Panc1
1
See all biosamples
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