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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1868
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
Transcription
4
DNA accessibility
Date released
20
July, 2019
1
August, 2017
1
November, 2018
Available data
23
bam
23
bigWig
18
tsv
5
bed narrowPeak
5
bigBed narrowPeak
2
fastq
tar
Organism
22
Homo sapiens
Biosample type
20
tissue
2
primary cell
Organ
5
brain
4
pancreas
3
adipose tissue
3
connective tissue
3
liver
2
kidney
2
musculature of body
1
heart
Project
22
AMP
Genome assembly (visualization)
22
hg19
18
GRCh38
Lab
22
AMP-T2D consortium
files.file_type!
tar
BIOSAMPLE
ASSAY
22 results
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small RNA-seq
FAIRE-seq
tissue
body of pancreas
2
frontal cortex
1
1
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
+ See 12 more…
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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