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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1130
total RNA-seq
379
ATAC-seq
289
single cell RNA-seq
204
DNase-seq
87
RNA microarray
73
snATAC-seq
56
pCHi-C
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
Transcription
3
DNA accessibility
Date released
18
July, 2019
1
March, 2023
1
October, 2019
Available data
19
bam
19
bigWig
16
tsv
3
bed narrowPeak
3
bigBed narrowPeak
1
tar
Organism
19
Homo sapiens
Biosample type
16
tissue
3
primary cell
1
cell line
Organ
5
brain
pancreas
3
adipose tissue
3
connective tissue
3
liver
2
kidney
2
musculature of body
1
blood vessel
1
epithelium
1
heart
1
vasculature
1
vein
Project
19
AMP
1
community
Genome assembly (visualization)
19
hg19
16
GRCh38
Lab
19
AMP-T2D consortium
1
Anna Gloyn, Oxford
organ_slims!
pancreas
BIOSAMPLE
ASSAY
20 results
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small RNA-seq
FAIRE-seq
siRNA RNA-seq
tissue
frontal cortex
1
1
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
heart
1
+ See 9 more…
primary cell
endothelial cell of umbilical vein
1
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
cell line
EndoC-BH1
1
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