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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1592
ChIP-seq
1286
total RNA-seq
331
ATAC-seq
181
DNase-seq
176
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
11
DNA methylation
4
DNA accessibility
Date released
8
July, 2019
6
August, 2017
1
November, 2018
Available data
9
bed bedMethyl
9
bigBed bedMethyl
5
fastq
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
Organism
15
Homo sapiens
Biosample type
15
tissue
primary cell
Organ
4
musculature of body
4
pancreas
2
brain
2
kidney
1
heart
1
liver
1
pericardium
Project
15
AMP
Genome assembly (visualization)
13
hg19
Lab
15
AMP-T2D consortium
biosample_type!
primary cell
BIOSAMPLE
ASSAY
15 results
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RRBS
FAIRE-seq
tissue
skeletal muscle tissue
4
islet of Langerhans
1
1
kidney
1
1
pancreas
1
1
brain
1
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