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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
279
DNA binding
1
DNA accessibility
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
32
September, 2018
31
June, 2019
25
October, 2019
9
November, 2017
5
May, 2019
4
August, 2021
Available data
248
bigWig
243
bam
227
bed narrowPeak
100
tagAlign
94
fastq
58
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
1
tar
Organism
280
Homo sapiens
Biosample type
871
tissue
484
cell line
280
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
93
epithelium
70
pancreas
24
vasculature
21
blood vessel
18
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
196
AMP
84
T1D
Genome assembly (visualization)
248
hg19
207
GRCh38
Lab
163
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
280 results
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ChIP-seq
FAIRE-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
1
skeletal muscle myoblast
15
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