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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1717
ChIP-seq
1412
total RNA-seq
410
ATAC-seq
293
single cell RNA-seq
121
DNase-seq
85
RNA microarray
78
snATAC-seq
73
WGBS
54
pCHi-C
28
Hi-C
17
small RNA-seq
16
RRBS
10
MeRIP-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
124
DNA accessibility
Date released
103
June, 2019
10
November, 2018
6
August, 2017
3
October, 2019
1
July, 2019
1
November, 2020
Available data
123
bam
123
bed narrowPeak
123
bigBed narrowPeak
123
bigWig
118
bed broadPeak
118
bigBed broadPeak
116
bed bed3+
14
fastq
Organism
124
Homo sapiens
Biosample type
108
tissue
14
primary cell
1
cell line
1
in vitro differentiated cells
Organ
kidney
36
limb
33
brain
33
musculature of body
30
heart
20
epithelium
18
ureter
vasculature
10
blood vessel
10
pancreas
9
connective tissue
6
liver
4
artery
4
eye
3
vein
2
adipose tissue
2
nerve
1
spleen
Project
124
AMP
Genome assembly (visualization)
118
GRCh38
107
hg19
Lab
124
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
vasculature
kidney
BIOSAMPLE
ASSAY
124 results
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Clear Filters
DNase-seq
FAIRE-seq
tissue
heart
18
muscle of arm
17
brain
14
muscle of leg
13
body of pancreas
4
+ See 28 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 6 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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