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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1758
ChIP-seq
1135
total RNA-seq
525
ATAC-seq
363
single cell RNA-seq
210
DNase-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
55
pCHi-C
34
Hi-C
21
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
84
February, 2021
5
January, 2018
2
December, 2019
Available data
84
txt
5
bigWig
5
fastq
2
tsv
Organism
91
Homo sapiens
Biosample type
86
tissue
4
in vitro differentiated cells
1
stem cell
Organ
84
bone element
2
kidney
adipose tissue
1
connective tissue
1
embryo
1
epithelium
Project
91
AMP
Genome assembly (visualization)
5
hg18
Lab
91
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
2
audit script error
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
91 results
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RNA microarray
GRO-seq
tissue
bone element
84
kidney interstitium
1
renal glomerulus
1
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
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