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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1527
total RNA-seq
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
21
RRBS
18
small RNA-seq
11
Hi-C
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
11
3D chromatin structure
Date released
23
July, 2019
6
August, 2017
1
August, 2021
1
December, 2018
1
October, 2019
Available data
hic
20
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
5
bed bed3+
5
bigWig
5
fastq
5
hdf5
3
cool
1
bedpe
Organism
32
Homo sapiens
Biosample type
16
tissue
14
primary cell
2
cell line
Organ
9
musculature of body
8
epithelium
5
brain
4
kidney
4
limb
4
liver
4
pancreas
3
vasculature
2
blood vessel
2
connective tissue
2
heart
1
eye
1
pericardium
Project
32
AMP
Genome assembly (visualization)
24
hg19
1
GRCh38
Lab
31
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
ATAC-seq
files.file_type!
hic
BIOSAMPLE
ASSAY
32 results
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RRBS
Hi-C
tissue
gastrocnemius medialis
4
skeletal muscle tissue
4
islet of Langerhans
1
1
brain
1
heart left ventricle
1
+ See 4 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 9 more…
cell line
HepG2
1
Panc1
1
See all biosamples
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