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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1142
ChIP-seq
955
total RNA-seq
190
ATAC-seq
180
DNase-seq
26
single cell RNA-seq
19
Hi-C
17
RRBS
16
small RNA-seq
4
pCHi-C
3
FAIRE-seq
2
Capture-C
1
snATAC-seq
Assay category
19
3D chromatin structure
Date released
9
March, 2020
4
July, 2019
4
October, 2019
2
August, 2021
Available data
15
hic
13
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
Organism
19
Homo sapiens
Biosample type
8
tissue
6
primary cell
4
in vitro differentiated cells
1
cell line
Organ
8
epithelium
pancreas
5
blood vessel
5
vasculature
3
brain
3
heart
3
liver
2
musculature of body
2
vein
1
connective tissue
1
kidney
Project
19
AMP
Genome assembly (visualization)
19
hg19
1
GRCh38
Lab
17
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
1
audit script error
assay_title!
siRNA RNA-seq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
19 results
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Hi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
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