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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
ChIP-seq
total RNA-seq
22
ATAC-seq
10
DNase-seq
8
Hi-C
4
pCHi-C
1
FAIRE-seq
1
MPRA
Assay category
8
3D chromatin structure
Date released
10
March, 2020
8
July, 2019
5
October, 2019
3
August, 2021
3
October, 2022
2
November, 2019
1
December, 2018
1
March, 2019
1
March, 2023
Available data
7
hic
6
bedpe bed3+
3
cool
1
bed bed3+
1
bigWig
1
hdf5
Organism
8
Homo sapiens
Biosample type
4
primary cell
2
in vitro differentiated cells
1
cell line
1
tissue
Organ
4
epithelium
4
pancreas
1
blood vessel
1
heart
1
vasculature
1
vein
Project
5
AMP
3
HPAP
Genome assembly (visualization)
8
hg19
1
GRCh38
Lab
5
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
audit script error
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
8 results
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Hi-C
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cell line
Panc1
1
tissue
heart
1
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