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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
200
DNA accessibility
10
3D chromatin structure
Date released
100
May, 2020
39
May, 2022
14
September, 2018
13
May, 2021
12
February, 2023
7
August, 2020
5
September, 2017
4
July, 2019
3
August, 2017
3
October, 2019
3
October, 2022
3
September, 2020
1
February, 2021
1
March, 2020
1
March, 2023
1
November, 2020
Available data
84
bam
82
bigWig
39
bed narrowPeak
39
zippedFastqFolder
32
fastq
22
bigBed narrowPeak
12
tsv
6
hic
4
bed bed3+
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
Organism
210
Homo sapiens
Biosample type
276
tissue
210
primary cell
46
in vitro differentiated cells
33
cell line
Organ
79
epithelium
74
pancreas
4
blood vessel
4
vasculature
3
brain
3
connective tissue
2
liver
2
vein
Project
157
AMP
52
HPAP
1
ITG
Genome assembly (visualization)
93
hg19
50
GRCh38
Lab
157
AMP-T2D consortium
52
Klaus Kaestner, Upenn
1
ITG
Audit category:
12
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
210 results
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ATAC-seq
Hi-C
primary cell
pancreatic alpha cell
35
1
pancreatic beta cell
23
1
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
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