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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
129
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
19
DNA accessibility
8
3D chromatin structure
Date released
14
June, 2019
6
October, 2019
3
October, 2022
2
July, 2019
1
March, 2020
1
November, 2019
Available data
19
bigWig
18
bed bed3+
17
bam
17
bed narrowPeak
17
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
6
hic
5
bedpe bed3+
3
cool
2
hdf5
Organism
27
Homo sapiens
Biosample type
25
primary cell
2
cell line
Organ
82
kidney
40
limb
39
musculature of body
35
brain
33
heart
27
epithelium
18
ureter
17
pancreas
16
vasculature
14
blood vessel
10
connective tissue
10
liver
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
24
AMP
3
HPAP
Genome assembly (visualization)
19
hg19
17
GRCh38
Lab
24
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
audit script error
2
inconsistent ontology term
BIOSAMPLE
ASSAY
27 results
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DNase-seq
Hi-C
primary cell
endothelial cell of umbilical vein
2
2
kidney tubule cell
3
brain microvascular endothelial cell
1
1
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 12 more…
cell line
EndoC_BH1
1
glomerular visceral epithelial cell
1
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