Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
47
DNA methylation
10
3D chromatin structure
Date released
41
May, 2022
6
February, 2021
4
July, 2019
3
October, 2022
1
March, 2020
1
March, 2023
1
October, 2019
Available data
41
zippedFastqFolder
6
fastq
6
hic
6
tsv
4
bed bed3+
4
bedpe bed3+
4
bigWig
4
hdf5
3
cool
Organism
57
Homo sapiens
Biosample type
57
primary cell
43
tissue
5
cell line
4
in vitro differentiated cells
Organ
54
epithelium
50
pancreas
4
blood vessel
4
vasculature
3
brain
2
vein
1
connective tissue
1
liver
Project
50
HPAP
6
AMP
1
ITG
Genome assembly (visualization)
9
hg19
1
GRCh38
Lab
50
Klaus Kaestner, Upenn
6
AMP-T2D consortium
1
ITG
Audit category:
4
audit script error
BIOSAMPLE
ASSAY
57 results
search-icon
table-tab-icon
Clear Filters
WGBS
Hi-C
primary cell
pancreatic alpha cell
31
1
pancreatic beta cell
16
1
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
+ See 4 more…
See all biosamples
Download