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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1283
total RNA-seq
1226
ChIP-seq
234
ATAC-seq
207
DNase-seq
100
single cell RNA-seq
18
small RNA-seq
17
WGBS
2
Hi-C
Assay category
100
Transcription
2
3D chromatin structure
Target of assay
3
control
Date released
48
July, 2018
43
April, 2018
3
August, 2018
3
July, 2019
3
June, 2018
1
March, 2023
1
October, 2019
Available data
101
bigWig
100
bam
100
tsv
92
fastq
1
bed bed3+
1
hdf5
1
hic
Organism
102
Homo sapiens
Biosample type
101
primary cell
1
cell line
Organ
75
pancreas
70
epithelium
4
connective tissue
3
brain
Project
101
AMP
1
ITG
Genome assembly (visualization)
127
hg19
102
GRCh38
Lab
101
AMP-T2D consortium
1
ITG
Audit category:
7
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
102 results
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single cell RNA-seq
Hi-C
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
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cell line
Panc1
1
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