Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1812
ChIP-seq
1403
total RNA-seq
489
ATAC-seq
354
single cell RNA-seq
208
DNase-seq
84
snATAC-seq
75
WGBS
48
pCHi-C
29
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
354
Transcription
29
3D chromatin structure
Target of assay
3
control
Date released
109
August, 2021
47
September, 2023
43
April, 2018
42
July, 2018
40
September, 2020
34
May, 2022
18
February, 2021
11
July, 2019
9
April, 2020
8
March, 2020
3
August, 2018
3
May, 2023
3
October, 2019
3
October, 2022
2
June, 2018
1
December, 2018
1
December, 2019
1
February, 2023
1
March, 2019
1
March, 2023
1
November, 2018
1
November, 2019
1
September, 2018
Available data
196
tsv
122
fastq
98
bigWig
93
bam
52
zippedFastqFolder
18
hic
15
bedpe bed3+
13
txt
8
csv
5
bed bed3+
5
hdf5
3
cool
1
bedpe
Organism
383
Homo sapiens
Biosample type
190
primary cell
190
tissue
3
cell line
Organ
96
heart
77
pancreas
76
epithelium
65
kidney
11
blood vessel
11
vasculature
9
lung
7
musculature of body
6
brain
5
connective tissue
5
liver
4
limb
2
artery
2
vein
Project
238
AMP
88
HPAP
47
KPMP
9
LungMap
1
ITG
Genome assembly (visualization)
115
hg19
95
GRCh38
Lab
223
AMP-T2D consortium
88
Klaus Kaestner, Upenn
47
KPMP
12
Katalin Susztak, Upenn
9
Xin Sun, UCSD
3
Bing Ren, UCSD
1
ITG
Audit category:
inconsistent ontology term
11
audit script error
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
383 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
Hi-C
primary cell
Langerhans cell
85
pancreatic alpha cell
12
1
pancreatic beta cell
12
1
pancreatic acinar cell
11
1
pancreatic delta cell
11
+ See 17 more…
tissue
kidney
64
1
heart left ventricle
18
1
heart right ventricle
17
1
left cardiac atrium
18
right cardiac atrium
18
+ See 17 more…
cell line
HepG2
2
Panc1
1
See all biosamples
Download