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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
113
Transcription
4
3D chromatin structure
Date released
78
February, 2021
18
August, 2021
5
January, 2019
5
October, 2019
4
March, 2020
4
May, 2021
2
November, 2019
1
December, 2018
Available data
113
tsv
105
bigWig
104
bam
6
fastq
2
bedpe bed3+
2
hic
1
bed bed3+
1
hdf5
Organism
117
Homo sapiens
Biosample type
1053
tissue
257
primary cell
140
in vitro differentiated cells
117
cell line
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
35
epithelium
35
pancreas
16
liver
8
embryo
4
kidney
Project
115
AMP
2
T1D
Genome assembly (visualization)
107
hg19
105
GRCh38
Lab
107
AMP-T2D consortium
10
Bing Ren, UCSD
Audit category:
37
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
117 results
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total RNA-seq
Hi-C
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
HepG2
14
2
H1-hESC
8
early embryonic cell
2
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