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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
270
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
26
DNA accessibility
7
3D chromatin structure
Date released
23
June, 2019
4
July, 2019
2
October, 2019
1
August, 2017
1
August, 2021
1
December, 2018
1
March, 2023
Available data
23
bam
23
bed bed3+
23
bed broadPeak
23
bed narrowPeak
23
bigBed broadPeak
23
bigBed narrowPeak
23
bigWig
1
bedpe bed3+
1
fastq
1
hic
Organism
33
Homo sapiens
Biosample type
22
tissue
10
primary cell
1
cell line
Organ
10
brain
9
kidney
8
epithelium
4
limb
4
musculature of body
3
heart
3
pancreas
2
liver
1
blood vessel
1
connective tissue
1
vasculature
Project
32
AMP
1
ITG
Genome assembly (visualization)
hg19
209
GRCh38
Lab
31
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
assembly!
hg19
BIOSAMPLE
ASSAY
33 results
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Clear Filters
DNase-seq
Hi-C
tissue
gastrocnemius medialis
4
body of pancreas
2
heart
2
Ammon's horn
1
caudate nucleus
1
+ See 12 more…
primary cell
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
cardiac fibroblast
1
chondrocytes
1
+ See 1 more…
cell line
HepG2
1
See all biosamples
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