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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
86
RNA microarray
59
ChIP-seq
42
ATAC-seq
29
snATAC-seq
14
single cell RNA-seq
9
Hi-C
9
pCHi-C
6
MeRIP-seq
4
DNase-seq
2
Capture-C
2
RRBS
1
STARR-seq
Assay category
9
3D chromatin structure
Date released
3
October, 2019
3
October, 2022
2
March, 2020
1
November, 2019
Available data
9
hic
8
bedpe bed3+
3
cool
Organism
9
Homo sapiens
Biosample type
4
in vitro differentiated cells
4
primary cell
1
cell line
Organ
5
epithelium
4
pancreas
1
blood vessel
1
vasculature
1
vein
Project
6
AMP
3
HPAP
Genome assembly (visualization)
9
hg19
Lab
6
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
9 results
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Hi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
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