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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1186
ChIP-seq
1158
total RNA-seq
219
ATAC-seq
185
DNase-seq
100
single cell RNA-seq
23
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
2
pCHi-C
1
snATAC-seq
Assay category
23
3D chromatin structure
Date released
8
March, 2020
4
July, 2019
3
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
Available data
18
hic
15
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
bedpe
Organism
23
Homo sapiens
Biosample type
11
tissue
9
primary cell
in vitro differentiated cells
3
cell line
Organ
8
epithelium
8
pancreas
5
blood vessel
5
vasculature
3
brain
3
heart
3
liver
2
musculature of body
2
vein
1
connective tissue
1
kidney
Project
20
AMP
3
HPAP
Genome assembly (visualization)
23
hg19
2
GRCh38
Lab
17
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
23 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
+ See 3 more…
cell line
EndoC_BH1
1
HepG2
1
Panc1
1
See all biosamples
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