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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
763
ChIP-seq
360
total RNA-seq
229
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
48
WGBS
33
DNase-seq
23
pCHi-C
14
Hi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
14
3D chromatin structure
Date released
4
July, 2019
3
October, 2022
2
October, 2019
1
August, 2021
1
December, 2018
1
March, 2020
1
March, 2023
1
November, 2019
Available data
8
hic
6
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
fastq
Organism
14
Homo sapiens
Biosample type
16
tissue
10
primary cell
4
cell line
4
in vitro differentiated cells
Organ
8
epithelium
5
pancreas
4
blood vessel
4
vasculature
3
brain
3
liver
2
vein
1
connective tissue
Project
10
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
12
hg19
2
GRCh38
Lab
9
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
Audit category:
4
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
14 results
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Hi-C
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
2
EndoC_BH1
1
Panc1
1
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