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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1284
total RNA-seq
1146
ChIP-seq
460
ATAC-seq
361
single cell RNA-seq
209
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
42
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
26
3D chromatin structure
Date released
8
July, 2019
8
March, 2020
3
October, 2022
2
August, 2021
2
October, 2019
1
March, 2019
1
March, 2023
1
November, 2019
Available data
17
hic
14
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
1
bedpe
Organism
26
Homo sapiens
Biosample type
16
tissue
10
primary cell
4
cell line
4
in vitro differentiated cells
Organ
7
epithelium
7
pancreas
6
musculature of body
5
blood vessel
5
vasculature
4
limb
3
brain
3
heart
2
liver
2
vein
1
connective tissue
1
kidney
Project
22
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
20
hg19
1
GRCh38
Lab
19
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
audit script error
BIOSAMPLE
ASSAY
26 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 4 more…
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