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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
54
pCHi-C
21
RRBS
18
small RNA-seq
14
Hi-C
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
Transcription
14
3D chromatin structure
Date released
26
July, 2019
2
October, 2019
1
August, 2021
1
December, 2018
1
March, 2019
1
March, 2023
Available data
23
bigWig
23
hic
bedpe bed3+
18
bam
18
tsv
5
bed bed3+
5
hdf5
3
cool
1
bedpe
1
fastq
Organism
32
Homo sapiens
Biosample type
22
tissue
8
primary cell
2
cell line
Organ
7
brain
6
musculature of body
5
liver
4
connective tissue
4
limb
4
pancreas
3
adipose tissue
3
blood vessel
3
epithelium
3
vasculature
2
kidney
1
heart
1
vein
Project
31
AMP
1
ITG
Genome assembly (visualization)
26
hg19
20
GRCh38
Lab
29
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
32 results
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small RNA-seq
Hi-C
tissue
gastrocnemius medialis
4
body of pancreas
2
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
+ See 12 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
+ See 3 more…
cell line
HepG2
1
Panc1
1
See all biosamples
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