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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1344
total RNA-seq
1279
ChIP-seq
508
ATAC-seq
362
single cell RNA-seq
206
DNase-seq
87
RNA microarray
84
snATAC-seq
70
WGBS
51
pCHi-C
19
RRBS
15
small RNA-seq
12
Hi-C
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
12
3D chromatin structure
Date released
7
July, 2019
2
October, 2019
1
August, 2021
1
March, 2019
1
March, 2023
Available data
21
hic
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
1
bedpe
Organism
12
Homo sapiens
Biosample type
6
tissue
5
primary cell
1
cell line
Organ
4
limb
4
musculature of body
3
blood vessel
3
brain
3
epithelium
3
vasculature
liver
2
pancreas
1
connective tissue
1
kidney
1
vein
Project
11
AMP
1
ITG
Genome assembly (visualization)
7
hg19
2
GRCh38
Lab
9
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bedpe bed3+
organ_slims!
liver
BIOSAMPLE
ASSAY
12 results
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Clear Filters
Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
1
kidney
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of umbilical vein
1
cell line
Panc1
1
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