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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1613
ChIP-seq
1130
total RNA-seq
379
ATAC-seq
289
single cell RNA-seq
204
DNase-seq
87
RNA microarray
73
snATAC-seq
53
pCHi-C
24
WGBS
19
RRBS
16
small RNA-seq
12
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
12
3D chromatin structure
Date released
8
July, 2019
1
August, 2021
1
December, 2018
1
March, 2023
1
October, 2019
Available data
16
hic
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
1
fastq
Organism
12
Homo sapiens
Biosample type
6
primary cell
5
tissue
1
cell line
Organ
4
limb
4
musculature of body
3
blood vessel
3
brain
3
epithelium
3
vasculature
2
liver
pancreas
1
connective tissue
1
kidney
1
vein
Project
11
AMP
1
ITG
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
10
AMP-T2D consortium
1
ITG
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
files.file_type!
bedpe bed3+
organ_slims!
pancreas
BIOSAMPLE
ASSAY
12 results
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Hi-C
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
tissue
gastrocnemius medialis
4
kidney
1
cell line
HepG2
1
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