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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1613
ChIP-seq
1516
total RNA-seq
527
ATAC-seq
360
single cell RNA-seq
180
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
55
pCHi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
8
Hi-C
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
8
3D chromatin structure
Date released
5
July, 2019
1
August, 2021
1
December, 2018
1
October, 2019
Available data
hic
20
bedpe bed3+
3
cool
2
bed bed3+
2
bigWig
2
hdf5
1
bedpe
1
fastq
Organism
8
Homo sapiens
Biosample type
5
tissue
2
cell line
1
primary cell
Organ
4
limb
4
musculature of body
brain
2
blood vessel
2
epithelium
2
liver
2
pancreas
2
vasculature
1
connective tissue
Project
8
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
7
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent assembly
files.file_type!
hic
organ_slims!
brain
BIOSAMPLE
ASSAY
8 results
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Clear Filters
Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
1
cell line
HepG2
1
Panc1
1
primary cell
endothelial cell of hepatic sinusoid
1
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