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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
857
ChIP-seq
243
total RNA-seq
128
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
24
Hi-C
17
WGBS
12
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
pCHi-C
Assay category
24
3D chromatin structure
Date released
10
March, 2020
4
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
December, 2018
1
March, 2019
1
March, 2023
Available data
23
hic
20
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
bedpe
1
fastq
Organism
24
Homo sapiens
Biosample type
11
tissue
6
primary cell
4
in vitro differentiated cells
3
cell line
Organ
7
pancreas
6
epithelium
3
blood vessel
3
heart
3
liver
3
vasculature
2
musculature of body
2
vein
1
kidney
Project
20
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
22
hg19
1
GRCh38
Lab
17
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
24 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
2
EndoC_BH1
1
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