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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
466
ChIP-seq
104
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
3
3D chromatin structure
Date released
1
December, 2018
1
November, 2019
1
October, 2019
Available data
1
bed bed3+
1
bedpe bed3+
1
bigWig
1
fastq
1
hdf5
1
hic
Organism
3
Homo sapiens
Biosample type
14
tissue
10
primary cell
4
in vitro differentiated cells
3
cell line
Organ
2
pancreas
1
epithelium
1
liver
Project
3
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
3
AMP-T2D consortium
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
3 results
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Hi-C
cell line
EndoC_BH1
1
HepG2
1
Panc1
1
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