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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
917
ChIP-seq
488
total RNA-seq
265
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
32
pCHi-C
28
DNase-seq
14
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
14
3D chromatin structure
Date released
4
July, 2019
October, 2019
3
March, 2020
3
October, 2022
1
August, 2021
1
December, 2018
1
March, 2023
1
November, 2019
Available data
9
hic
8
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
1
fastq
Organism
14
Homo sapiens
Biosample type
tissue
9
primary cell
3
cell line
2
in vitro differentiated cells
Organ
7
epithelium
4
pancreas
3
blood vessel
3
brain
3
liver
3
vasculature
1
connective tissue
1
vein
Project
10
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
12
hg19
1
GRCh38
Lab
9
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
Audit category:
3
audit script error
3
inconsistent ontology term
month_released!
October, 2019
biosample_type!
tissue
BIOSAMPLE
ASSAY
14 results
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Clear Filters
Hi-C
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
+ See 4 more…
cell line
HepG2
2
EndoC_BH1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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