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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
5
RRBS
5
total RNA-seq
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
32
DNA binding
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
22
August, 2017
10
June, 2019
2
March, 2020
Available data
21
bed narrowPeak
21
bigWig
15
tagAlign
13
bed broadPeak
10
bam
8
bigBed narrowPeak
2
bedpe bed3+
2
hic
Organism
34
Homo sapiens
Biosample type
24
tissue
10
primary cell
Organ
556
liver
227
pancreas
221
brain
154
connective tissue
137
epithelium
137
heart
107
vasculature
104
blood vessel
73
adipose tissue
limb
60
blood
60
bodily fluid
53
kidney
45
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
19
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
34
AMP
Genome assembly (visualization)
23
hg19
8
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
organ_slims!
limb
BIOSAMPLE
ASSAY
34 results
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Clear Filters
ChIP-seq
Hi-C
tissue
skeletal muscle tissue
22
psoas muscle
2
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
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