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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1458
ChIP-seq
994
total RNA-seq
337
ATAC-seq
287
single cell RNA-seq
203
DNase-seq
87
RNA microarray
73
snATAC-seq
51
pCHi-C
24
WGBS
21
Hi-C
19
RRBS
16
small RNA-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
3D chromatin structure
Date released
8
July, 2019
7
March, 2020
2
August, 2021
2
October, 2019
1
December, 2018
1
March, 2023
Available data
12
hic
9
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
1
fastq
Organism
21
Homo sapiens
Biosample type
12
tissue
7
primary cell
in vitro differentiated cells
2
cell line
Organ
pancreas
8
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
20
AMP
1
ITG
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
18
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
organ_slims!
pancreas
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
21 results
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Hi-C
tissue
gastrocnemius medialis
4
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 1 more…
cell line
HepG2
2
See all biosamples
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