Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1795
ChIP-seq
1403
total RNA-seq
489
ATAC-seq
354
single cell RNA-seq
206
DNase-seq
84
snATAC-seq
75
WGBS
48
pCHi-C
27
Hi-C
19
RRBS
18
small RNA-seq
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
27
3D chromatin structure
Date released
8
July, 2019
7
March, 2020
3
August, 2021
3
October, 2022
2
October, 2019
1
December, 2018
1
March, 2019
1
March, 2023
1
November, 2019
Available data
16
hic
14
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
bedpe
1
fastq
Organism
27
Homo sapiens
Biosample type
16
tissue
8
primary cell
3
cell line
Organ
8
pancreas
7
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
vein
1
connective tissue
1
kidney
Project
23
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
20
hg19
2
GRCh38
Lab
19
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
3
audit script error
Audit category:
1
inconsistent assembly
organ_slims!
vein
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
27 results
search-icon
table-tab-icon
Clear Filters
Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
+ See 3 more…
cell line
HepG2
2
Panc1
1
See all biosamples
Download