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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1854
ChIP-seq
1489
total RNA-seq
525
ATAC-seq
353
single cell RNA-seq
210
DNase-seq
85
RNA microarray
63
WGBS
57
pCHi-C
55
snATAC-seq
21
Hi-C
10
MeRIP-seq
6
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
3D chromatin structure
Date released
9
March, 2020
July, 2019
4
October, 2019
3
August, 2021
2
November, 2019
1
December, 2018
1
March, 2019
1
March, 2023
Available data
18
hic
16
bedpe bed3+
1
bed bed3+
1
bedpe
1
bigWig
1
fastq
1
hdf5
Organism
21
Homo sapiens
Biosample type
12
tissue
4
cell line
4
in vitro differentiated cells
1
primary cell
Organ
6
pancreas
3
heart
3
liver
2
blood vessel
2
epithelium
2
musculature of body
2
vasculature
1
kidney
vein
Project
20
AMP
1
ITG
Genome assembly (visualization)
18
hg19
2
GRCh38
Lab
16
AMP-T2D consortium
3
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
audit script error
Audit category:
1
inconsistent assembly
organ_slims!
vein
audit.ERROR.category!
audit script error
month_released!
July, 2019
BIOSAMPLE
ASSAY
21 results
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Hi-C
tissue
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
cell line
HepG2
2
EndoC_BH1
1
Panc1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
chondrocytes
1
See all biosamples
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