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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
770
ChIP-seq
592
total RNA-seq
175
ATAC-seq
75
single cell RNA-seq
56
WGBS
14
DNase-seq
13
Hi-C
11
snATAC-seq
10
MeRIP-seq
5
small RNA-seq
4
RRBS
4
pCHi-C
2
Capture-C
2
FAIRE-seq
2
STARR-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
whole genome sequencing assay
Assay category
13
3D chromatin structure
Date released
3
October, 2022
2
August, 2021
2
March, 2020
2
November, 2019
1
December, 2018
1
July, 2019
1
March, 2019
1
October, 2019
Available data
9
bedpe bed3+
9
hic
3
cool
2
bed bed3+
2
bigWig
2
hdf5
1
bedpe
1
fastq
Organism
13
Homo sapiens
Biosample type
5
tissue
4
cell line
4
primary cell
Organ
9
pancreas
8
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
10
AMP
3
HPAP
Genome assembly (visualization)
11
hg19
1
GRCh38
Lab
7
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
13 results
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Clear Filters
Hi-C
tissue
islet of Langerhans
3
liver
1
pancreas
1
cell line
HepG2
2
EndoC_BH1
1
Panc1
1
primary cell
endothelial cell of hepatic sinusoid
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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