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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1684
ChIP-seq
1269
total RNA-seq
425
ATAC-seq
222
single cell RNA-seq
203
DNase-seq
87
RNA microarray
39
pCHi-C
26
WGBS
25
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
8
snATAC-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
0
HiChIP
Assay category
203
DNA accessibility
Date released
182
June, 2019
9
November, 2018
6
October, 2019
5
August, 2017
1
November, 2020
Available data
200
bam
200
bed narrowPeak
200
bigBed narrowPeak
200
bigWig
197
bed broadPeak
197
bigBed broadPeak
195
bed bed3+
12
fastq
Organism
203
Homo sapiens
Biosample type
173
tissue
27
primary cell
2
cell line
1
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
203
AMP
2
T1D
Genome assembly (visualization)
198
GRCh38
178
hg19
Lab
203
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
203 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
+ See 15 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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