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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1567
ChIP-seq
1436
total RNA-seq
464
ATAC-seq
363
single cell RNA-seq
195
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
52
pCHi-C
25
Hi-C
20
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
195
DNA accessibility
Date released
180
June, 2019
9
November, 2018
October, 2019
5
August, 2017
2
February, 2023
1
November, 2020
Available data
194
bam
194
bed narrowPeak
194
bigBed narrowPeak
194
bigWig
192
bed broadPeak
192
bigBed broadPeak
190
bed bed3+
12
fastq
Organism
197
Homo sapiens
Biosample type
171
tissue
23
primary cell
2
cell line
1
in vitro differentiated cells
Organ
78
kidney
33
musculature of body
32
brain
32
limb
30
heart
18
ureter
14
epithelium
9
connective tissue
7
pancreas
vasculature
6
liver
5
blood vessel
4
eye
2
adipose tissue
2
artery
1
spleen
Project
195
AMP
2
T1D
Genome assembly (visualization)
192
GRCh38
172
hg19
Lab
195
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
month_released!
October, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
197 results
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Clear Filters
DNase-seq
HiChIP
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
+ See 13 more…
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
See all biosamples
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