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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1765
ChIP-seq
1526
total RNA-seq
523
ATAC-seq
363
single cell RNA-seq
176
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
57
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
176
DNA accessibility
Date released
155
June, 2019
9
November, 2018
6
October, 2019
5
August, 2017
2
February, 2023
1
November, 2020
Available data
173
bam
173
bed narrowPeak
173
bigBed narrowPeak
173
bigWig
170
bed broadPeak
170
bigBed broadPeak
168
bed bed3+
12
fastq
Organism
178
Homo sapiens
Biosample type
142
tissue
31
primary cell
4
cell line
1
in vitro differentiated cells
Organ
81
kidney
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
176
AMP
2
T1D
Genome assembly (visualization)
171
GRCh38
150
hg19
Lab
176
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
organ_slims!
limb
BIOSAMPLE
ASSAY
178 results
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DNase-seq
HiChIP
tissue
heart
18
brain
14
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 34 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 18 more…
cell line
EndoC_BH1
2
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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