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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1811
ChIP-seq
1533
total RNA-seq
530
ATAC-seq
363
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
211
DNA accessibility
Date released
187
June, 2019
10
October, 2019
8
November, 2018
5
August, 2017
2
February, 2023
1
November, 2020
Available data
208
bam
208
bed narrowPeak
208
bigBed narrowPeak
208
bigWig
205
bed broadPeak
205
bigBed broadPeak
203
bed bed3+
11
fastq
Organism
213
Homo sapiens
Biosample type
177
tissue
31
primary cell
4
cell line
1
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
spleen
Project
211
AMP
2
T1D
Genome assembly (visualization)
206
GRCh38
185
hg19
Lab
211
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
organ_slims!
spleen
BIOSAMPLE
ASSAY
213 results
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Clear Filters
DNase-seq
HiChIP
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 18 more…
cell line
EndoC_BH1
2
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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