Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1812
ChIP-seq
1377
total RNA-seq
412
ATAC-seq
320
single cell RNA-seq
208
DNase-seq
62
snATAC-seq
48
pCHi-C
34
WGBS
29
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
320
Transcription
Target of assay
3
control
Date released
106
August, 2021
47
September, 2023
43
April, 2018
42
July, 2018
40
September, 2020
May, 2022
18
February, 2021
9
April, 2020
3
August, 2018
3
February, 2023
3
July, 2019
3
May, 2023
2
June, 2018
1
December, 2019
1
November, 2018
1
September, 2018
Available data
196
tsv
121
fastq
93
bam
93
bigWig
19
zippedFastqFolder
13
txt
8
csv
Organism
322
Homo sapiens
Biosample type
173
tissue
147
primary cell
2
cell line
Organ
93
heart
69
epithelium
69
pancreas
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
Project
212
AMP
52
HPAP
47
KPMP
9
LungMap
2
T1D
Genome assembly (visualization)
93
GRCh38
93
hg19
Lab
201
AMP-T2D consortium
52
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
2
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
7
audit script error
month_released!
May, 2022
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
322 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
HiChIP
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 12 more…
primary cell
Langerhans cell
52
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic acinar cell
11
pancreatic delta cell
11
+ See 11 more…
cell line
EndoC_BH1
2
See all biosamples
Download