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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
260
total RNA-seq
212
ChIP-seq
119
single cell RNA-seq
111
ATAC-seq
61
snATAC-seq
17
pCHi-C
10
MeRIP-seq
8
Hi-C
6
WGBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
119
Transcription
Date released
47
September, 2023
40
September, 2020
May, 2022
12
February, 2021
9
April, 2020
8
August, 2021
3
May, 2023
2
February, 2023
Available data
34
fastq
19
zippedFastqFolder
8
txt
Organism
121
Homo sapiens
Biosample type
67
tissue
52
primary cell
2
cell line
Organ
58
kidney
9
lung
Project
52
HPAP
47
KPMP
11
AMP
9
LungMap
2
T1D
Lab
AMP-T2D consortium
52
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
2
Kyle Gaulton, UCSD
month_released!
May, 2022
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
121 results
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single cell RNA-seq
HiChIP
tissue
kidney
58
lung
9
primary cell
Langerhans cell
52
cell line
EndoC_BH1
2
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