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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
469
ChIP-seq
79
total RNA-seq
10
ATAC-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
DNase-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
79
Transcription
Date released
52
February, 2021
17
August, 2021
5
January, 2019
3
October, 2019
2
February, 2023
2
March, 2020
Available data
79
tsv
70
bam
70
bigWig
5
fastq
Organism
81
Homo sapiens
Biosample type
1035
tissue
154
primary cell
134
in vitro differentiated cells
81
cell line
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
epithelium
33
pancreas
14
liver
8
embryo
4
kidney
Project
79
AMP
2
T1D
Genome assembly (visualization)
70
GRCh38
70
hg19
Lab
70
AMP-T2D consortium
9
Bing Ren, UCSD
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
81 results
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total RNA-seq
HiChIP
cell line
smooth muscle cell of the coronary artery
52
HepG2
14
H1-hESC
8
EndoC_BH1
2
early embryonic cell
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
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