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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
93
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
103
DNA accessibility
Date released
105
February, 2023
100
May, 2020
77
May, 2022
76
August, 2021
34
May, 2021
26
November, 2019
22
February, 2021
22
October, 2019
14
September, 2018
11
May, 2023
8
October, 2017
7
August, 2020
6
July, 2019
5
August, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
1
November, 2020
Available data
65
bed narrowPeak
12
tsv
10
bed bed3
4
bed bed3+
3
bed bedgraph
3
bigWig
3
txt
Organism
105
Homo sapiens
Biosample type
79
tissue
12
in vitro differentiated cells
12
primary cell
2
cell line
Organ
35
artery
35
blood vessel
35
heart
35
vasculature
27
eye
12
epithelium
11
pancreas
10
connective tissue
4
bone element
4
skeleton
1
adipose tissue
1
brain
Project
92
AMP
13
T1D
Genome assembly (visualization)
45
hg19
35
GRCh38
Lab
89
AMP-T2D consortium
13
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
9
inconsistent ontology term
BIOSAMPLE
ASSAY
105 results
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Clear Filters
ATAC-seq
HiChIP
tissue
coronary artery
35
retina
15
pigmented layer of retina
12
islet of Langerhans
11
acetabular part of hip bone
1
+ See 5 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
embryonic stem cell
1
+ See 2 more…
primary cell
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
cell line
EndoC_BH1
2
See all biosamples
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