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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1742
ChIP-seq
1396
total RNA-seq
428
ATAC-seq
299
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
Date released
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
6
August, 2021
4
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
85
Homo sapiens
Biosample type
56
primary cell
28
tissue
2
cell line
Organ
11
pancreas
10
lung
8
blood
8
bodily fluid
6
kidney
1
musculature of body
Project
48
HPAP
20
T1D
10
LungMap
8
AMP
Genome assembly (visualization)
1
hg19
Lab
48
Klaus Kaestner, Upenn
20
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
AMP-T2D consortium
Audit category:
29
audit script error
organ_slims!
epithelium
BIOSAMPLE
ASSAY
86 results
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Clear Filters
snATAC-seq
HiChIP
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
skeletal muscle tissue
1
cell line
EndoC_BH1
2
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