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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1566
ChIP-seq
1268
total RNA-seq
386
ATAC-seq
291
single cell RNA-seq
192
DNase-seq
86
RNA microarray
84
snATAC-seq
52
pCHi-C
28
WGBS
22
Hi-C
18
small RNA-seq
15
RRBS
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1268
Transcription
Date released
497
February, 2021
190
May, 2020
120
July, 2018
94
May, 2021
89
August, 2017
67
August, 2021
52
February, 2023
39
July, 2019
26
May, 2022
25
February, 2020
25
October, 2019
19
November, 2019
11
March, 2020
6
April, 2018
5
January, 2019
4
November, 2020
1
May, 2023
Available data
1118
tsv
1087
bam
1083
bigWig
147
fastq
59
txt
2
bed bed3+
Organism
1270
Homo sapiens
Biosample type
1035
tissue
154
primary cell
in vitro differentiated cells
81
cell line
Organ
465
connective tissue
403
pancreas
398
adipose tissue
189
liver
epithelium
71
heart
62
bone element
61
blood vessel
61
vasculature
60
kidney
56
artery
19
eye
17
brain
8
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
1126
AMP
105
T1D
39
HPAP
Genome assembly (visualization)
1084
hg19
1082
GRCh38
Lab
1040
AMP-T2D consortium
112
Kyle Gaulton, UCSD
49
Katalin Susztak, Upenn
39
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
organ_slims!
epithelium
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
1270 results
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Clear Filters
total RNA-seq
HiChIP
tissue
adipose tissue
382
islet of Langerhans
298
liver
167
bone tissue
58
kidney
49
+ See 46 more…
primary cell
monocyte
54
exocrine cell
39
osteoblast
5
CD8-positive, alpha-beta T cell
4
B cell
2
+ See 33 more…
cell line
smooth muscle cell of the coronary artery
52
HepG2
14
H1-hESC
8
EndoC_BH1
2
early embryonic cell
2
+ See 3 more…
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