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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1819
ChIP-seq
1473
total RNA-seq
456
ATAC-seq
299
single cell RNA-seq
131
DNase-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
55
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
DNA methylation
Date released
11
July, 2019
6
August, 2017
1
October, 2022
Available data
15
bed bedMethyl
15
bigBed bedMethyl
4
fastq
1
txt
Organism
17
Homo sapiens
Biosample type
10
tissue
7
primary cell
1
cell line
Organ
6
epithelium
5
musculature of body
kidney
2
brain
2
heart
2
liver
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
18
AMP
Genome assembly (visualization)
15
hg19
Lab
18
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
kidney
BIOSAMPLE
ASSAY
18 results
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RRBS
MPRA
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
liver
1
+ See 2 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
retinal pigment epithelial cell
1
+ See 2 more…
cell line
MIN6
1
See all biosamples
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