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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
0
MeRIP-seq
Assay category
73
DNA binding
2
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
50
August, 2017
23
October, 2018
1
June, 2019
1
November, 2018
Available data
39
bam
38
fastq
21
bigWig
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
Organism
75
Homo sapiens
Biosample type
75
tissue
Organ
558
liver
250
brain
236
pancreas
164
heart
162
connective tissue
154
epithelium
133
kidney
113
vasculature
108
blood vessel
102
limb
75
adipose tissue
72
musculature of body
60
blood
60
bodily fluid
38
artery
37
nerve
22
embryo
21
spleen
19
vein
18
ureter
9
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
75
AMP
Genome assembly (visualization)
21
hg19
20
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
75 results
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Clear Filters
ChIP-seq
DNase-seq
tissue
subcutaneous abdominal adipose tissue
36
omental fat pad
11
2
subcutaneous adipose tissue
12
white adipose tissue
12
adipose tissue
2
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